Data Submission Form

MCAST searches a set of sequences (the "database") using a set of motifs (the "query") for clusters of "hits" to the motifs. This page allows you to submit a query and a database to MCAST.

There is more documentation available.

---

Inputs

Instead of uploading your own files, you can run MCAST using a demonstration query and database by checking this box and clicking the 'submit' button:

1. Query
   
   This file should contain a set of motifs. Here is an example query.
   
   
2. Database
   
   This file should contain the FASTA sequences. Here is an example.
   
   

You may click now to use the default options.

Search options

These options control the search.

p-value threshold for motif hits

maximum allowed distance between adjacent hits

1 10 100 1000 print matches with E-values less than this value

pseudocount weight

---

Send reports of problems to cegrant.washington.edu