Papers & publications
Click on the links below to see abstracts.
- Shobhit Gupta, John A. Stamatoyannopoulos, Timothy L. Bailey and William Stafford Noble.
"Quantifying similarity between motifs"
Genome Biology 8:R24, 2007.
- Grundy, William Noble. A Bayesian
Approach to Motif-based Protein Modeling. Ph.D. dissertation.
University of California, San Diego. June, 1998.
- Grundy, William N., Timothy L. Bailey, Charles P. Elkan and
Michael E. Baker. "Meta-MEME:
Motif-based Hidden Markov Models of Biological Sequences".
Computer
Applications in the Biosciences, 13(4):397-406,
1997.
- Grundy, William N., Timothy L. Bailey, Charles P. Elkan and
Michael E. Baker. "Hidden
Markov Model Analysis of Motifs in Steroid Dehydrogenases and their
Homologs." Biochemical and
Biophysical Research Communications, 231(3):760-766,
1997.
- Grundy, William N. and Charles P. Elkan. "Motif-based
Hidden Markov Models for Multiple Sequence Alignment" (poster).
Fifth
International Conference on Intelligent Systems for Molecular
Biology (ISMB-97). Halkidiki, Greece. June 21-25,
1997.
- Bailey, Timothy L., Michael E. Baker, Charles P. Elkan and
William N. Grundy. "MEME, MAST, and Meta-MEME: New Tools for Motif
Discovery in Protein Sequences" in Pattern Discovery in
Molecular Biology. J. Wang, B. Shapiro and D. Shasha, editors.
Oxford UP, 1998. In press.
- Grundy, William N., Timothy L. Bailey and Charles P. Elkan.
"ParaMEME:
A Parallel Implementation and a Web Interface for a DNA and Protein
Motif Discovery Tool" (with corrections). Computer Applications
in the Biosciences 12(4):303-310,
1996.
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Please send comments and questions to Charles Grant at cegrant@u.washington.edu.